SNP Profiles matching AM 1/8 [POU]

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 Key

 1234567891011121314
_Input profile
TTCCCCGGTTGGCCCCAACCAGGGTTCG
1._RUQ_1379
TTCCCCGGTTGGCCCCAACCAGGGTTCG
2._UF_712
__CCGGTT_CCCCAACC__TT_
3._UF_712
__CCGGTT_CCCCAACC__TT_
4._UF_712
__CCGGTT_CCCCAACC__TT_
5._UF_712
__CCGGTT_CCCCAACC__TT_
6._RUQ_1638
__CCGGTT_CCCCAACC__TT_
7._RUQ_1638
__CCGGTT_CCCCAACC__TT_
8._UF_712
__CCGGTT_CCCCAACC__TT_
9._LCT_EEN_90
__CCGGTT_CC-AACC__TT_
10._LCT_EEN_90
__CCGGTT_CC_AACC__TT_
11._RUQ_1638
TTCCCCGGTTGGCCCCAACCAAGGTTCC
12._RUQ_1683
TTCCCCGGTTGGCCCCAACCAAGGTTCC
13._GC-01-089-5-06
TTCCCCGGTTGGCCCCAACCAAGGTTCC
14._GC-01-089-5-06
TTCCCCGGTTGGCCCCAACCAAGGTTCC
15._GC-01-089-5-06
TTCCCCGGTTGGCCCCAACCAAGGTTCC
16._GC-01-089-5-06
TTCCCCGGTTGGCCCCAACCAAGGTTCC
17._UF_712
__CCGGTT_CCCC_CC__TT_
18._GC-08-089-2-12
TTCCCCGGTTGGCCGGAACCAGGGTTCC
19._GC-08-089-2-12
TTCCCCGGTTGGCCGGAACCAGGGTTCC
20._GC-08-089-2-12
TTCCCCGGTTGGCCGGAACCAGGGTTCC
21._GC-08-089-2-12
TTCCCCGGTTGGCCGGAACCAGGGTTCC
22._GC-08-089-2-12
TTCCCCGGTTGGCCGGAACCAGGGTTCC
23._GC-08-089-2-12
TTCCCCGGTTGGCCGGAACCAGGGTTCC
24._GC-08-089-2-12
TTCCCCGGTTGGCCGGAACCAGGGTTCC
25._GC-08-089-2-12
TTCCCCGGTTGGCCGGAACCAGGGTTCC
26._GC-08-089-2-12
TTCCCCGGTTGGCCGGAACCAGGGTTCC
27._GC-05-069-2-20
TTCCCCGGTTGGCCGGAACCAGGGTTCC
28._GC-05-069-2-20
TTCCCCGGTTGGCCGGAACCAGGGTTCC
29._GC-05-069-2-20
TTCCCCGGTTGGCCGGAACCAGGGTTCC
30._GC-08-089-2-12
TTCCCCGGTTGGCCGGAACCAGGGTTCC
 1516171819202122232425262728
_Input profile
GGAACCGTGGCCCCCTTTGGAGGTCCGG
1._RUQ_1379
GGAACCGTGGCCCCCTTTGGAGGTCCGG
2._UF_712
GGAACCGGGGCC_CT_GG___GG
3._UF_712
GGAACCGGGGCC_CT_GG___GG
4._UF_712
GGAACCGGGGCC_CT_GG___GG
5._UF_712
GGAACCGGGGCC_CT_GG___GG
6._RUQ_1638
GGAACCGGGGCC_CT_GG___GG
7._RUQ_1638
GGAACCGGGGCC_CT_GG___GG
8._UF_712
GGAACCGGGGCC_CT_GG___GG
9._LCT_EEN_90
GGACCCGGGGCC_CT_GG___GG
10._LCT_EEN_90
GGACCCGGGGCC_CT_GG___GG
11._RUQ_1638
GGAACCGGGGCCCCCTTTGGAATTCCGG
12._RUQ_1683
GGAACCGGGGCCCCCTTTGGAATTCCGG
13._GC-01-089-5-06
GGAACCGGGGCCCCCTTTGGAATTCCGG
14._GC-01-089-5-06
GGAACCGGGGCCCCCTTTGGAATTCCGG
15._GC-01-089-5-06
GGAACCGGGGCCCCCTTTGGAATTCCGG
16._GC-01-089-5-06
GGAACCGGGGCCCCCTTTGGAATTCCGG
17._UF_712
GGAACCGGGGTT_CT_GG___GG
18._GC-08-089-2-12
GGACCCGGGGCCCCCTTTGGAATTCCGG
19._GC-08-089-2-12
GGACCCGGGGCCCCCTTTGGAATTCCGG
20._GC-08-089-2-12
GGACCCGGGGCCCCCTTTGGAATTCCGG
21._GC-08-089-2-12
GGACCCGGGGCCCCCTTTGGAATTCCGG
22._GC-08-089-2-12
GGACCCGGGGCCCCCTTTGGAATTCCGG
23._GC-08-089-2-12
GGACCCGGGGCCCCCTTTGGAATTCCGG
24._GC-08-089-2-12
GGACCCGGGGCCCCCTTTGGAATTCCGG
25._GC-08-089-2-12
GGACCCGGGGCCCCCTTTGGAATTCCGG
26._GC-08-089-2-12
GGACCCGGGGCCCCCTTTGGAATTCCGG
27._GC-05-069-2-20
GGACCCGGGGCCCCCTTTGGAATTCCGG
28._GC-05-069-2-20
GGACCCGGGGCCCCCTTTGGAATTCCGG
29._GC-05-069-2-20
GGACCCGGGGCCCCCTTTGGAATTCCGG
30._GC-08-089-2-12
GGACCCGGGGCCCCCT_GGAATTCCGG
 2930313233343536373839404142
_Input profile
GGTTAACCCCGGGGTTGTCCCCTTCCGG
1._RUQ_1379
GGTTAACCCCGGGGTTGTCCCCTTCCGG
2._UF_712
_TTAA_CC___GG__TTCCGG
3._UF_712
_TTAA_CC___GG__TTCCGG
4._UF_712
_TTAA_CC___GG__TTCCGG
5._UF_712
_TTAA_CC___GG__TTCCGG
6._RUQ_1638
_TTAA_CC___GG__TTCCGG
7._RUQ_1638
_TTAA_CC___GG__TTCCGG
8._UF_712
_TTAA_CC___GG__TT_GG
9._LCT_EEN_90
GGTTAA_CC___GG__TTCCGG
10._LCT_EEN_90
_TTAA_CC___GG__TTCCGG
11._RUQ_1638
GGTTAACCCCGGGGTTGGCCCCTTCCGG
12._RUQ_1683
GGTTAACCCCGGGGTTGGCCCCTTCCGG
13._GC-01-089-5-06
GGTTAACCCCGGGGTTGG_CCTTCCGG
14._GC-01-089-5-06
GGTTAACCCCGGGGTTGG_CCTTCCGG
15._GC-01-089-5-06
GGTTAACCCCGGGGTTGG_CCTTCCGG
16._GC-01-089-5-06
GGTTAACCCCGGGGTTGG_CCTT_GG
17._UF_712
_TTAA_CC___GG__TTCCGG
18._GC-08-089-2-12
GGTTAACCCCGGGGTTGG_CCTTCCGG
19._GC-08-089-2-12
GGTTAACCCCGGGGTTGG_CCTTCCGG
20._GC-08-089-2-12
GGTTAACCCCGGGGTTGG_CCTTCCGG
21._GC-08-089-2-12
GGTTAACCCCGGGGTTGG_CCTTCCGG
22._GC-08-089-2-12
GGTTAACCCCGGGGTTGG_CCTTCCGG
23._GC-08-089-2-12
GGTTAACCCCGGGGTTGG_CCTTCCGG
24._GC-08-089-2-12
GGTTAACCCCGGGGTTGG_CCTTCCGG
25._GC-08-089-2-12
GGTTAACCCCGGGGTTGG_CCTTCCGG
26._GC-08-089-2-12
GGTTAACCCCGGGGTTGG_CCTTCCGG
27._GC-05-069-2-20
GGTTAACCCCGGGGTTGG_CCTTCCGG
28._GC-05-069-2-20
GGTTAACCCCGGGGTTGG_CCTTCCGG
29._GC-05-069-2-20
GGTTAACCCCGGGGTTGG_CCTTCCGG
30._GC-08-089-2-12
GGTTAACCCCGGGGTTGG_CCTTCCGG

Input profile: AM_1_/8_[POU] RUQ_469

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._AM_1_/57_[POU] RUQ_1379

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._UF_712

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._UF_712

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 2
 Dapeng Zhang, 2016

4._UF_712

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 4
 Dapeng Zhang, 2016

5._UF_712

95.8 %
24 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

6._UF_712 RUQ_1638

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._UF_712 RUQ_1638

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._UF_712

95.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1506 3
 Dapeng Zhang, 2016

9._LCT_EEN_90

93.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2014

10._LCT_EEN_90

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2016

11._UF_712 RUQ_1638

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._UF_712 RUQ_1683

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._UF_712 GC-01-089-5-06

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._UF_712 GC-01-089-5-06

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._UF_712 GC-01-089-5-06

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

16._UF_712 GC-01-089-5-06

92.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._UF_712

91.3 %
23 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 39 34_36
 Dapeng Zhang, 2016

18._LCT_EEN_90 GC-08-089-2-12

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

19._LCT_EEN_90 GC-08-089-2-12

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

20._LCT_EEN_90 GC-08-089-2-12

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

21._LCT_EEN_90 GC-08-089-2-12

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

22._LCT_EEN_90 GC-08-089-2-12

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._LCT_EEN_90 GC-08-089-2-12

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

24._LCT_EEN_90 GC-08-089-2-12

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

25._LCT_EEN_90 GC-08-089-2-12

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

26._LCT_EEN_90 GC-08-089-2-12

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._POUND_10 GC-05-069-2-20

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

28._POUND_10 GC-05-069-2-20

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._POUND_10 GC-05-069-2-20

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

30._LCT_EEN_90 GC-08-089-2-12

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484